Location: Pig whole-body with embedded organs using automatic workflow for inserting the organs @ 34e8653a2f43 / fitting workflow / pig-settings.json

Author:
elias-soltani <egha355@aucklanduni.ac.nz>
Date:
2022-02-25 12:42:46+13:00
Desc:
Initial upload
Permanent Source URI:
https://models.physiomeproject.org/workspace/82f/rawfile/34e8653a2f430dc6276d137ff39c6f4786b12737/fitting workflow/pig-settings.json

{
    "modelCoordinatesField": "coordinates",
    "dataCoordinatesField": "coordinates",
    "fibreField": null,
    "markerGroup": null,
    "diagnosticLevel": 1,
    "fitterSteps": [
        {
            "_FitterStepConfig": true,
            "groupSettings": {}
        },
        {
            "_FitterStepFit": true,
            "groupSettings": {
                "<default>": {
                    "strainPenalty": [
                        0.01
                    ],
                    "curvaturePenalty": [
                        200.0
                    ]
                }
            },
            "numberOfIterations": 2,
            "maximumSubIterations": 1,
            "updateReferenceState": false
        },
        {
            "_FitterStepFit": true,
            "groupSettings": {
                "spinal cord": {
                    "dataWeight": 100.0
                }
            },
            "numberOfIterations": 1,
            "maximumSubIterations": 1,
            "updateReferenceState": false
        },
        {
            "_FitterStepFit": true,
            "groupSettings": {
                "skin epidermis": {
                    "dataWeight": 100.0
                }
            },
            "numberOfIterations": 1,
            "maximumSubIterations": 1,
            "updateReferenceState": false
        },
        {
            "_FitterStepFit": true,
            "groupSettings": {
                "diaphragm": {
                    "dataWeight": 100.0
                }
            },
            "numberOfIterations": 1,
            "maximumSubIterations": 1,
            "updateReferenceState": false
        }
    ]
}